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    H3P44 H3 histone pseudogene 44 [ Homo sapiens (human) ]

    Gene ID: 347376, updated on 16-Apr-2024

    Summary

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    Official Symbol
    H3P44provided by HGNC
    Official Full Name
    H3 histone pseudogene 44provided by HGNC
    Primary source
    HGNC:HGNC:42981
    See related
    AllianceGenome:HGNC:42981
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    p55; H3.8; H3F3AP5
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    Genomic context

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    See H3P44 in Genome Data Viewer
    Location:
    Xp11.22
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (50905355..50906362)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (50176575..50177582)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (50648355..50649362)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene diacylglycerol kinase kappa Neighboring gene Sharpr-MPRA regulatory region 2913 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:50212987-50213784 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:50324379-50325149 Neighboring gene shroom family member 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:50377907-50378408 Neighboring gene RNA, U6 small nuclear 935, pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chrX:50440638-50441169 Neighboring gene NANOG hESC enhancer GRCh37_chrX:50469171-50469706 Neighboring gene Sharpr-MPRA regulatory region 11230 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:50556241-50556742 Neighboring gene high mobility group box 1 pseudogene 15 Neighboring gene bone morphogenetic protein 15

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Crystal Structure and Characterization of Novel Human Histone H3 Variants, H3.6, H3.7, and H3.8. Taguchi H, et al. Biochemistry, 2017 Apr 25. PMID 28374988
    2. The human histone H3 complement anno 2011. Ederveen TH, et al. Biochim Biophys Acta, 2011 Oct. PMID 21782046
    3. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. Dias Neto E, et al. Proc Natl Acad Sci U S A, 2000 Mar 28. PMID 10737800, Free PMC Article
    4. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Cryo-EM and biochemical analyses of the nucleosome containing the human histone H3 variant H3.8.
      Title: Cryo-EM and biochemical analyses of the nucleosome containing the human histone H3 variant H3.8.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • H3 histone, family 3A pseudogene
    • H3 histone, family 3A, pseudogene 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_029840.2 

      Range
      101..1108
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      50905355..50906362
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      50176575..50177582
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NR_003933.1: Suppressed sequence

      Description
      NR_003933.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is not transcribed.
    Nucleotide Protein
    Heading Accession and Version

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