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    SNORD62B small nucleolar RNA, C/D box 62B [ Homo sapiens (human) ]

    Gene ID: 692093, updated on 17-Jun-2024

    Summary

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    Official Symbol
    SNORD62Bprovided by HGNC
    Official Full Name
    small nucleolar RNA, C/D box 62Bprovided by HGNC
    Primary source
    HGNC:HGNC:23031
    See related
    Ensembl:ENSG00000231587 AllianceGenome:HGNC:23031
    Gene type
    snoRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    U62; U62B
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    Genomic context

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    See SNORD62B in Genome Data Viewer
    Location:
    9q34.13
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (131490486..131490571)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (143703388..143703473)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (134365873..134365958)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376299 Neighboring gene uncharacterized LOC105376300 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:134227487-134227988 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:134230857-134231474 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:134231475-134232090 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:134234556-134235172 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:134248209-134248730 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:134248731-134249254 Neighboring gene proline rich coiled-coil 2B Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29187 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20413 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20414 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:134269973-134270734 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:134271497-134272258 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29188 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:134276654-134277645 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20416 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:134284252-134284752 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29189 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:134311463-134312438 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:134312439-134313412 Neighboring gene Sharpr-MPRA regulatory region 9532 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:134364584-134365084 Neighboring gene small nucleolar RNA, C/D box 62A Neighboring gene uncharacterized LOC124902290 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:134375403-134376602 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:134378091-134378958 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:134378959-134379824 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29192 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:134388206-134388706 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:134388707-134389207 Neighboring gene uncharacterized LOC105376301 Neighboring gene protein O-mannosyltransferase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A small nucleolar RNA requirement for site-specific ribose methylation of rRNA in Xenopus. Tycowski KT, et al. Proc Natl Acad Sci U S A, 1996 Dec 10. PMID 8962077, Free PMC Article
    2. SIRT7-dependent deacetylation of the U3-55k protein controls pre-rRNA processing. Chen S, et al. Nat Commun, 2016 Feb 12. PMID 26867678, Free PMC Article
    3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. Dieci G, et al. Genomics, 2009 Aug. PMID 19446021

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003050.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL358781
      Related
      ENST00000426867.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      131490486..131490571
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      143703388..143703473
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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