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    IGKV2D-40 immunoglobulin kappa variable 2D-40 [ Homo sapiens (human) ]

    Gene ID: 28878, updated on 17-Jun-2024

    Summary

    Official Symbol
    IGKV2D-40provided by HGNC
    Official Full Name
    immunoglobulin kappa variable 2D-40provided by HGNC
    Primary source
    HGNC:HGNC:5804
    See related
    Ensembl:ENSG00000251039 IMGT/GENE-DB:IGKV2D-40; AllianceGenome:HGNC:5804
    Gene type
    other
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    O1; IGKV2D40
    Summary
    Predicted to be involved in immune response. Located in blood microparticle and extracellular exosome. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

    See IGKV2D-40 in Genome Data Viewer
    Location:
    2p11.2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (89851758..89852491)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (90407018..90407751)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (89890568..89891301)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene immunoglobulin kappa locus Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89850195-89851044 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89851045-89851894 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89851895-89852742 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89852743-89853592 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89853593-89854440 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:89859347-89859897 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:89860208-89860918 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:89860919-89861628 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:89864940-89865490 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89868115-89868990 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89867239-89868114 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89866363-89867238 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89869865-89870740 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:89870741-89871614 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:89871615-89872490 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:89872491-89873364 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:89873365-89874240 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89874241-89875115 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89875116-89875990 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89875991-89876865 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89876866-89877741 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89877742-89878616 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89878617-89879491 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89879492-89880365 Neighboring gene uncharacterized LOC105374862 Neighboring gene ATP binding cassette subfamily D member 1 pseudogene 1 Neighboring gene immunoglobulin kappa variable 1D-39 Neighboring gene immunoglobulin kappa variable 2D-38 (pseudogene)

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_000833.2 

      Range
      396365..397098 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      89851758..89852491
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      90407018..90407751
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)